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BDGP Resources :96-well RNA In Situ Hybridization Protocol
作者:未知 来源:fruitfly.org 时间:2007-7-17

    1.Materials
    1.1.Probe Preparation
    1.1.1.Cell Inoculation
    1.96-well, deep square-well round bottom plate (E&K Scientific Ritter Riplate).
    2.Super Broth (SB: 10 gm 4-Morpholinepropanesulfonic acid (MOPS), 20 gm Bacto Yeast Extract, 30 gm Tryptone Peptone/L).
    3.Antibiotic (80 µg/ml final concentration Carbenicillin- for pFLC-I orpBS SK, 80 µg/ml chloramphenicol for pOT2 or pOTB7).
    4.Multichannelpipette (Brand).
    5.Multichannel pipette (Qiagen Multi Electrapette 1550).
    6.Airpore Tape Sheets (Qiagen).
    7.Speedball roller (E&K Scientific).
    8.Incubator/Shaker (Innova 4300).

    1.1.2. PCR
    1. 96-well semi-skirt PCR plate (E&K Scientific).
    2. Deoxynucleotides (Promega, store at -20℃).
    3. Sequence specific primers ( Invitrogen, store at -20℃).
    pFLC-I vector:
    M13 (-21) 5’ TGTAAAACGACGGCCAGT 3’
    M13 (REV) 5’ GGAAACAGCTATGACCATG 3’
    p0T2a vector:

    4. DNA Polymerase (DyNAzyme EXT DNA Polymerase-MJ Research, store at -20℃).
    5. Inoculated cells (can be stored for up to 7 days at 4 ℃).
    6. Multichannel pipette (Brand).
    7. GeneAmp PCR System 9700 (Applied Biosystems).
    8. Speedball roller (E&K Scientific).
    9. Aluminum plate sealers (Polarseal:Foil adhesive Tape for multiwell plates T592100) (E&K Scientific) or 8-strip PCR caps (E&K Scientific).

    1.1.3. PCR Product Purification (G-50 column chromatography)
    1. Sephadex ™G-50 Superfine (Amersham Pharmacia Biotech).
    2. MultiScreen column loader-45 µl (Milliore) MAHV N45 filter plate (Millipore).
    3. MultiScreen Centrifuge Alignment Frame (Millipore).
    4. Multichannel pipette (Brand).
    5. Sterile 0.1% diethyl pyrocarbonate (DEPC, Sigma, handle carefully, toxic) treated H2O(autoclaved).
    6. Eppendorf Centrifuge 5810 (equipped with 96-well plate holders).
    7. 96-well semi-skirt PCR plate (E&K Scientific).
    9. Aluminum plate sealers or 8-strip PCR caps (E&K Scientific).

    1.1.4. RNA Probe Preparation
    1. 96-well semi-skirt PCR plate (E&K Scientific).
    2. Multichannel pipette (Brand).
    3. Speedball roller (E&K Scientific).
    4. GeneAmp PCR System 9700 (Applied Biosystems).
    5. Aluminum plate sealers or 8-strip PCR caps (E&K Scientific).
    6. Eppendorf Centrifuge 5810 (equipped with 96-well plate holders).
    7. 2X Polymerase mix (2U T7 RNA polymerase (Roche, store at -20℃), 4.6U RNase inhibitor (Amersham Parmacia Biotech), 10mM NTPs (Roche, store at -20℃), 3.5mM digoxigenin-11-UTP (Roche, store at -20℃), 40mM Tris pH 8.0, 6mM MgCl2, 10mM DTT and 2mM spermidine).

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