DNA测序trace图编辑、突变分析、contig编辑、序列拼接软件。

CodonCode Aligner is a program for sequence assembly, contig editing, and mutation detection, available for Windows and Mac OS X. Aligner is compatible with Phred-Phrap and fully supports sequence quality scores, while offering a familiar, easy-to-learn user interface, as shown in the following screen shot:
 
With CodonCode Aligner, you can:
Import sequences from text files
Import sequences from ABI and SCF files
End clip
Vector trim
Assemble contigs
Align to a reference sequence
Find heterozygous mutations
Analyze heterozygous insertions and deletions
Define regions of interest ("features"), for example low quality consensus regions
Quickly navigate between user-defined features
Import and edit Phrap-generated assemblies
Run Phred and Phrap directly from Aligner projects
Export sequences and features
Export Consed-compatible assembly projects

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