A Plasmid Editor的缩写。质粒构建与显示及绘制软件。
Highlights restriction sites in the editing window
Accurately reflects Dam/Dcm blocking of enzyme sites
Highlights text using pre-defined and custom feature libraries
Highlights text using user defined features
Shows translation, Tm, %GC, ORF of selected DNA in real-time
Reads DNA Strider, Fasta, Genbank and EMBL files
Saves files as DNA Strider-compatible or Genbank file format
Highlights and draws graphic maps using feature annotations from genbank and embl files
Directly BLASTs selected sequence at NCBI or wormbase
Text map shows DNA sequence, translation, and features as text-based graphics
Creates graphic restriction maps- linear or circular with features indicated
Connects graphic and text features with hyperlink double click
Saves graphics as encapsulated postscript or scalable vector graphics
Copy and save graphics as Windows metafiles (MS Windows only)
Virtual restriction digest
Draws pre-defined and user-defined DNA ladders
Connects bands to text by double-click
Reads ABI sequencing trace files
Sequences in ABI traces can be aligned directly to a reference sequence, with the alignment hyperlinked back to te trace.
Selects sites matching multiple criteria (union/intersection- cut frequency, site type) in all open windows
Selects sites that cut more often in one sequence than another (for snip-SNP detection or diagnostic digests)
Has user defined enzyme grouping to distiguish eg. enzymes currently in stock.
Allows users to define new enzymes by name and recognition site
Imports DNA Strider format files (simple enzyme, site lists) available from REBASE
Most analysis windows are hyperlinked to their corresponding sequences, including:
- Graphic Maps
- Text maps
- Virtual Digests
- Alignments (including ABI sequences)
- Silent Sites
- Translation
- Primer Find
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